Friday, April 5, 2024

Early herding communities of the Southern Iberian Peninsula


Early herding communities of the Southern Iberian Peninsula used a wide variety of livestock management strategies 

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DENTAL PIECES OF SHEEP FOUND IN THE CUEVA DE EL TORO SAMPLED FOR THIS STUDY. (AUTHOR: ALEJANDRO SIERRA, UAB).

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CREDIT: ALEJANDRO SIERRA, UAB

The herding groups of the Southern Iberian Peninsula applied different management strategies for their livestock at the beginning of the Neolithic period, with different breeding, feeding and movement patterns, depending on their ecological and productive needs. This is indicated by a study led by the Universitat Autònoma de Barcelona (UAB) that has reconstructed the feeding practices of the first herding communities occupying the Cueva de El Toro (Antequera, Malaga) 7,200 years ago, with the aim of exploring their feeding strategies and the socioeconomic factors that could have influenced them.

The study, published in the journal PLOS ONE, involved researchers from the Department of Prehistory of the UAB, as well as from the University of La Laguna (Tenerife), Milà i Fontanals Institution of Humanities Research (IMF-CSIC), the University of Cardiff, and the Natural History Museum of Paris.

The agricultural economy in the Iberian Peninsula during the Neolithic period developed very quickly, between 7,600 and 7,400 years ago. However, specific information on the herding strategies of the first Neolithic communities, especially in the south, is limited, mainly due to the difficulty of investigating these management practices in the same place and in such a short archaeological period of time.

The study published today has been able to reconstruct their livestock management practices, including those of altitudinal mobility, in the same site and with a very precise time resolution. By means of high-resolution radiocarbon dating of eight dental specimens from the Cueva de El Toro and the analysis of stable carbon and oxygen isotopes in the enamel, researchers were able to confirm that the animals were managed in the cave during a period of only 240 years, during the Neolithic expansion throughout the Iberian Peninsula, and to establish their feeding patterns.

The results show that the herding communities applied different breeding patterns - in the autumn, winter and spring - thereby controlling the reproduction of their herds; they fed the animals different plants throughout the annual cycle, with some animals consuming species typical of saline areas in the summer and had them graze at different altitudes and in mountainous areas. This large variability indicates that, probably, each sheep was herded in a different way, and that it was possible to apply different patterns within one same flock.

These discoveries question the previous perception of homogeneity in the management of livestock at the beginning of the Neolithic in the western Mediterranean and reinforce the hypothesis of the complexity of the first Neolithic populations of southern Iberia. "The different herding strategies that we have found fit in the economic model proposed for the Neolithic communities of southern Iberia, which have been considered as highly mobile herding communities", says Alejandro Sierra, researcher at the UAB who coordinated the study.

The variability identified could be explained as an adaptive response of the first agricultural and farming societies for diverse and not unrelated reasons, such as better access to resources, changes in climatic conditions or the dominant socio-economic characteristics of each location. In this sense, the study published today "may have broader implications for understanding the adaptability of the first agricultural and farming communities at the beginning of the Neolithic period in the Iberian Peninsula", says María Saña, researcher at the UAB and coordinator of the research.

Wood was crucial raw material 300,000 years ago

During archaeological excavations in the Schöningen open-cast coal mine in 1994, the discovery of the oldest, remarkably well-preserved hunting weapons known to humanity caused an international sensation. Spears and a double-pointed throwing stick were found lying between animal bones about ten meters below the surface in deposits at a former lakeshore. In the years that followed, extensive excavations have gradually yielded numerous wooden objects from a layer dating from the end of a warm interglacial period 300,000 years ago. The findings suggested a hunting ground on the lakeshore. An interdisciplinary research team from the Universities of Göttingen and Reading (UK), and the Lower Saxony State Office for Cultural Heritage (NLD) has now examined all the wood objects for the first time. State-of-the-art imaging techniques such as 3D microscopy and micro-CT scanners have produced surprising results. The research was published in PNAS.

 

This is the first time that researchers have been able to demonstrate new ways of handling and working the wood, such as the “splitting technique”. Small pieces of split wood were sharpened, for example to use them in processing hunted animals. First author Dr Dirk Leder from NLD says: "There is evidence of much more extensive and varied processing of spruce and pine wood than previously thought. Selected logs were shaped into spears and throwing sticks and brought to the site, while broken tools were repaired and recycled on site." At least 20 spears and throwing sticks had been left behind on the former lakeshore. This doubles the number of known wooden weapons at the site. Dr Tim Koddenberg from the University of Göttingen explains: "The extraordinary state of preservation of the Schöningen wood has enabled us, for the first time, to document and identify the woodworking techniques in detail thanks to state-of-the-art microscopy methods.”

 

The wide range of woodworking techniques used, as well as the various weapons and tools of early humans, show the outstanding importance of wood as a raw material, which is almost never preserved from this period. The Schöningen finds bear witness to extensive experience in woodworking, technical know-how and sophisticated work processes. Project leader Professor Thomas Terberger, who works at the NLD and the University of Göttingen, states: "Wood was a crucial raw material for human evolution, but it is only in Schöningen that it has survived from the Palaeolithic period in such quality". Schöningen is therefore part of the internationally outstanding cultural heritage of early humans. Only recently, the site was included in the nomination list for UNESCO World Heritage Site at the request of the state of Lower Saxony.

Wednesday, April 3, 2024

Chickens were widely raised across southern Central Asia from 400 BCE through medieval period


Eggshell 

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AN EGGSHELL FRAGMENT FROM THE SITE OF BASH TEPA, REPRESENTING ONE OF THE EARLIEST PIECES OF EVIDENCE FOR CHICKENS ON THE SILK ROAD

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CREDIT: ROBERT SPENGLER

Chickens are one of the most economically important animals in the world today. However, the story of their origins and dispersal across the ancient world is still poorly understood. In fact, new archaeological techniques have recently led to the recognition that many finds of bones previously thought to represent early chickens in fact belonged to wild birds. Now, in a new publication, an international team of archaeologists, historians, and biomolecular scientists present the earliest clear evidence for the raising of chickens for egg production, and argue that the loss of seasonal egg laying was the main driver for the dispersal of domestic chickens across Eurasia and northeast Africa. 

Using eggshell fragments collected from 12 archaeological sites spanning roughly 1500 years, the researchers show that chickens were widely raised in Central Asia from approximately 400 BCE to 1000 CE and were likely dispersed along the ancient Silk Road. The abundance of eggshells further suggests that the birds were laying out of season. It was this trait of prolific egg laying, the researchers argue, that made the domestic chicken so attractive to ancient peoples.

To reach these conclusions, the team collected tens of thousands of eggshell fragments from sites located along the main Central Asian corridor of the Silk Road. They then used a method of biomolecular analysis called ZooMS to identify the source of the eggs. Much like genetic analysis, ZooMS can make species identifications from animal remains such as bone, skin and shell, but it relies on protein signals rather than DNA. This makes it a faster and more cost-effective option than genetic analysis.

“This study showcases the potential of ZooMS to shed light on human-animal interactions in the past,” says Dr. Carli Peters, researcher at the Max Planck Institute of Geoanthropology and first author of the new paper.

The identification of these shell fragments as chickens, and their abundance throughout the sediment layers at each site, led the researchers to an important conclusion: the birds must have been laying more frequently than their wild ancestor, the red jungle fowl, which nests once per year and typically lays six eggs per clutch.

“This is the earliest evidence for the loss of seasonal egg laying yet identified in the archaeological record,” says Dr. Robert Spengler, leader of the Domestication and Anthropogenic Evolution research group and principal investigator on the study. “This is an important clue for better understanding the mutualistic relationships between humans and animals that resulted in domestication.”

Taken together, the new study suggests an answer to the age-old riddle of the chicken and the egg. In Central Asia, evidence suggests that the ability to lay a multitude of eggs is what made the chicken the chicken we know today – a global species of enormous economic importance. The authors hope that this study will demonstrate the potential of new, cost-effective methods and interdisciplinary collaboration to address long-standing questions about the past.


Friday, March 29, 2024

Violence at a time of crisis in ancient Peru

 


Analysis of skeletons exhumed at a burial ground dating from the period 500-400 BCE, shortly after the collapse of the Chavín culture, revealed lethal injuries inflicted on men, women and children, as well as signs of material poverty

Peer-Reviewed Publication

FUNDAÇÃO DE AMPARO À PESQUISA DO ESTADO DE SÃO PAULO

Study reveals evidence of violence at a time of crisis in ancient Peru 

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VARIOUS TRAUMATIC INJURIES IN ONE OF THE INDIVIDUALS STUDIED: A) PERIMORTEM PENETRATING FRACTURE IN RIGHT PARIETAL PRODUCED BY BLUNT FORCE TRAUMA; B) CUT MARK IN RIGHT SUPERCILIARY ARCH RELATING TO SHARP FORCE TRAUMA, AND PERIMORTEM INJURY RELATING TO STONE FLAKE, WHICH REMAINS EMBEDDED IN RIGHT WALL OF NASAL PYRIFORM APERTURE; C) HEALED LINEAR PENETRATING FRACTURE AND CUT MARKS IN LEFT ZYGOMATIC BONE RELATING TO SHARP-BLUNT FORCE TRAUMA, AND HEALED NASAL FRACTURE 

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CREDIT: LUIS PEZO-LANFRANCO

The transition from the fifth to the fourth century BCE (Before the Common Era) seems to have been a critical period for the Central Andes, a region now part of Peru. Researchers have found evidence of turbulence during the passage from the Middle Formative period (1200-400 BCE) to the Late Formative period (400-1 BCE). Political disintegration and intergroup violence were apparently part of the context, possibly associated with a shift from theocracy to secular government. A new study, published in the journal Latin American Antiquity, consistently reinforces these suppositions. 

The study was conducted by a team of Peruvian, Colombian and Brazilian researchers led by Peruvian bioarcheologist Luis Pezo-Lanfranco, then affiliated with the Biological Anthropology Laboratory at the University of São Paulo’s Institute of Biosciences (IB-USP) in Brazil. The project was supported by FAPESP via the Grant Program for Young Investigators in Emerging Research Centers. 

“We made a detailed analysis of the skeletal remains of 67 individuals excavated at a burial ground dating from the period 500-400 BCE and located in the Supe Valley region, a few kilometers from Caral, a famous ceremonial center that functioned between 2900 and 1800 BCE. There we detected injury patterns characteristic of repeated events of interpersonal violence. Among the individuals examined, 80% of the adults and adolescents died from inflicted traumatic injuries,” Pezo-Lanfranco told Agência FAPESP. He currently works in the Department of Prehistory at the Autonomous University of Barcelona (UAB) in Spain. 

Perimortem injuries to the skull, face and chest observed in several individuals are compatible with lethal, probably intercommunity, violence, whose victims included children. “Our hypothesis is that a group of strangers came to the community and committed the murders. After the aggressors left, the murder victims were buried by their own people with the usual funeral rites, as suggested by the burial patterns,” he said.

Perimortem means at or near the time of death. Bone damage in perimortem injuries shows no evidence of healing. Bone damage in antemortem injuries shows evidence of healing.

Although perimortem trauma was the most frequent type of injury among the adult skeletons studied, as well as some of the child remains, many examples of antemortem trauma were also found, and several individuals displayed both, suggesting the occurrence of at least two violent events during their lives. The first led to injuries that healed, while the second killed them.

“The markers point to exposure to repetitive and lethal violence during the course of their lives,” Pezo-Lanfranco said. The most frequent injuries were depressed fractures of the cranial vault, other maxillofacial fractures, thoracic fractures (mainly in ribs and scapulae), and “defensive” fractures of the ulna (forearm, indicating an attempt to parry a blow).

Sixty-four of the 67 individuals studied were buried in a fetal position: 12 in dorsal decubitus (lying on their back), four in ventral decubitus (on their stomach), seven in left lateral decubitus (on their left side), and 41 in right lateral decubitus. The fetal position is a recurring burial pattern in prehistoric and ancient communities worldwide. Given its association with the womb, some experts believe it reflects the expectation of rebirth after death. 

Besides the signs of violence, the analysis of the bones showed a high incidence of non-specific stresses and infectious diseases, possibly associated with adverse living conditions due to a combination of a shortage of resources and population growth. The simplicity of most of the grave goods also points to poverty. Many of the skeletons were buried with plain cotton fabric, woven mats and basketry, gourds containing vegetables, cotton seeds and roots, necklaces, and pottery. “Stable isotope studies showed that staple crops were the basis for their subsistence,” Pezo-Lanfranco said.

Competition for scant resources in the Supe Valley region was probably a major factor in the collapse of the Chavín culture, which spread through Peru’s mountains and coast between 1200 and 500 BCE. Its center was Chavín de Huantar, a monumental ceremonial site in northern Peru in the Marañon River basin. The Marañón rises in the Peruvian Andes at about 5,800 m, first flowing northwest and then turning northeast to meet the Ucayali and become the Upper Amazon and Solimões in Brazil.

“The Chavín system reached exhaustion during the Middle to Late Formative transition, around 500-400 BCE. Several ceremonial centers, including Chavín de Huantar, were desacralized and abandoned. Political formations organized around the religious sphere disintegrated, perhaps characterizing the decline of theocracy and the emergence of secular government,” Pezo-Lanfranco said.

The Chavín people worshipped a “zooanthropomorphic” deity resembling a man-jaguar. Gods that combine animal and human attributes are featured in many ancient cultures around the world, including those of Crete, India and Egypt. In a purely speculative approach, some scholars think they may be later re-elaborations of prehistoric shamanic traditions in which the virtues of tutelary animals are syncretized in the figure of the shaman. This hypothesis cannot be confirmed on the basis of existing knowledge.

The name of the Chavín man-jaguar god is unknown. Unlike ancient civilizations in the Old World, the Andean people who worshiped the deity left no written records that could be deciphered to furnish more detailed information. It is worth stressing that the period in question preceded the formal establishment of the Inca Empire by almost 2,000 years. Founded by Pachacuti in 1438 CE (Common Era), the Inca Empire was the ultimate expression of thousands of years of Andean civilizations, yet it lasted for less than 100 years. The Spanish executed the last reigning Inca Emperor, Atahualpa, in 1533, and in 1572 captured and killed Túpac Amaru in Vilcabamba, where he had been leading the resistance. 

For the researchers who conducted the study, the results are particularly important because of what they reveal about an era of ancient Andean history that has so far been poorly documented. Few burial grounds from the period in the Central Andes have been excavated, and still fewer have been found to contain remains as well-conserved as these. Their conservation is due mainly to the dry climate in the region, permitting detailed observation of injuries in almost intact bones. 

“The study belongs to a field we call the ‘bioarcheology of violence”, which helps understand the nature of interpersonal conflict around the middle of the first millennium before the common era. On the other hand, data from the same analysis, to be published soon, offers several answers regarding factors in this society that modulated morbidity and mortality, which developed in the hypothetical context of population pressure and political transition associated with the collapse of belief systems in a highly resource-poor environment,” Pezo-Lanfranco said.

Plant and animal domestication entailed a few thousand years across extensive geographies

 Archaeologist Xinyi Liu at Washington University in St. Louis teamed up with Martin Jones of the University of Cambridge to write a new paper for the Proceedings of the National Academy of Sciences that explains how recent research is connecting the science of biological domestication to early food globalization.

Liu, an associate professor of archaeology and associate chair of the Department of Anthropology in Arts & Sciences, proposes a new conceptual framework to understand domestication, which is relevant not only to anthropology but other fields such as biology and ecology.

In this Q&A, he also offers his perspective on how understanding the past conditions can help us to forge a vision for the future.

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The domestication of plants and animals is among the most significant transitions in human history. How has our understanding of domestication changed recently?

Our new article focuses on how we conceptualize domestication. A considerable intellectual legacy has depicted domestication as a series of short-lived, localized and episodic events. Some of the literature, particularly those pieces dating back to the early 20th century, envisioned the process as a transition from humans within nature to humans controlling nature in a revolutionary fashion.

The metaphor there is “revolution.” So, as people described it, there was a “Neolithic Revolution” that functioned in a similar way as the “Industrial Revolution” or the “scientific revolution” — a rapid technological shift followed by changes in societies, according to some narratives.

It is time to reconsider all this. Newly emergent evidence from the last 15 years challenges the idea of rapid domestication. This evidence shows unambiguously that plant and animal domestication in a range of species entailed a more gradual transition spanning a few thousand years across extensive geographies.

How has archaeology contributed to this line of inquiry?

Much of this evidence was brought to light by archaeological and scientific investigations. For example, it took about 5,000 years for the domestication traits of wheat to be fully developed from its wild morphology, according to archaeobotanical work in the Near East. In the lower Yangtze Valley in China, research informed a similar process that ancient communities had cultivated rice for a few millennia before the plant reached domesticated states, in the biological sense.

So domestication has extended in time. But you also argue that it has extended in space. What does that mean?

Over the last 15 years we’ve also seen an improvement in the understanding of how people have moved domesticated plants and animals over continents. In some cases, people moved crops and stocks before the genetic changes associated with domestication were fully fixed within the species. This raises questions about the role translocations played in the domestication process.

Central to our inquiry is the relationship between domesticated crops and stocks and their free-living ancestors, or progenitors. Newer genetic evidence suggests that long-term gene flow between wild and domestic species was much more common than previously appreciated.

It makes sense: At the so-called domestication center, where ancestral varieties were dominant, such gene flow would have been very strong. No meaningful mechanism could have stopped the introgression.

But if farmers took their crops, or herders their stocks, and moved to a new environment beyond the natural distribution of the ancestors, then selection pressures would have changed dramatically. Eventually you are domesticating in a single pathway, with no return. Such a process has been documented genetically and archaeologically in a number of domesticated species, such as maize and wheat.

How do human preferences or traditions factor in?

If crop or stock movements were entangled with the domestication process, the newly introduced species would have to adapt to the new physical environment encountered. But they would have also been adapted to align with new cultural habits. We envision both the physical and cultural adaptation played roles in the fixation of some domestication traits.

Does this research have any implications for modern agriculture?

Understanding the past conditions can help us to forge visions about the future. In that sense, archaeology plays a key role in establishing the historical and community roots of a range of contemporary challenges, such as food security, planetary health and sustainability, providing solutions drawing from humanity at the deepest level.

One such example is the positive impact that archaeogenetic research about millet made on the livelihoods of farmers across the globe. At its 75th session, the United Nations General Assembly declared 2023 the International Year of Millets to raise awareness of the crop’s deep community roots and future potential. There has been considerable recent momentum in understanding the biodiversity and historical geography of millets, which are a diverse group of cereals originating from several continents, including pearl, proso (or broomcorn), foxtail, barnyard, little, kodo, browntop, finger and fonio millets.

Millets can grow on arid lands with minimal inputs and are resilient to changes in climate. They are, therefore, an ideal solution for communities to increase self-sufficiency and reduce reliance on imported cereal grains.

These grains once sustained ancient populations by large. Archaeology played a key role in establishing the original biogeography, domestication and early dispersals of millets. The knowledge we have gained consequently has profoundly impacted food security and conservation in areas where millets are culturally relevant.


Ancient DNA reveals the appearance of a 6th century Chinese emperor

 


Peer-Reviewed Publication

CELL PRESS

The facial reconstruction of Emperor Wu who was ethnically Xianbei 

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THE FACIAL RECONSTRUCTION OF EMPEROR WU WHO WAS ETHNICALLY XIANBEI

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CREDIT: PIANPIAN WEI

What did an ancient Chinese emperor from 1,500 years ago look like? A team of researchers reconstructed the face of Chinese Emperor Wu of Northern Zhou using DNA extracted from his remains. The study, published March 28 in the journal Current Biology, suggests the emperor’s death at the age of 36 might be linked to a stroke. It also sheds light on the origin and migration patterns of a nomadic empire that once ruled parts of northeastern Asia.

Emperor Wu was a ruler of the Northern Zhou dynasty in ancient China. Under his reign from AD 560 to AD 578, Emperor Wu built a strong military and unified the northern part of ancient China after defeating the Northern Qi dynasty.

Emperor Wu was ethnically Xianbei, an ancient nomadic group that lived in what is today Mongolia and northern and northeastern China.

“Some scholars said the Xianbei had ‘exotic’ looks, such as thick beard, high nose bridge, and yellow hair,” says Shaoqing Wen, one of the paper’s corresponding authors at Fudan University in Shanghai. “Our analysis shows Emperor Wu had typical East or Northeast Asian facial characteristics,” he adds.

In 1996, archaeologists discovered Emperor Wu’s tomb in northwestern China, where they found his bones, including a nearly complete skull. With the development of ancient DNA research in recent years, Wen and his team managed to recover over 1 million single-nucleotide polymorphisms (SNPs) on his DNA, some of which contained information about the color of Emperor Wu’s skin and hair. Combined with Emperor Wu’s skull, the team reconstructed his face in 3D. The result shows Emperor Wu had brown eyes, black hair, and dark to intermediate skin, and his facial features were similar to those of present-day Northern and Eastern Asians.

“Our work brought historical figures to life,” says Pianpian Wei, the paper’s co-corresponding author at Fudan University. “Previously, people had to rely on historical records or murals to picture what ancient people looked like. We are able to reveal the appearance of the Xianbei people directly.”

Emperor Wu died at the age of 36, and his son also died at a young age with no clear reason. Some archaeologists say Emperor Wu died of illness, while others argue the emperor was poisoned by his rivals. By analyzing Emperor Wu’s DNA, researchers found that the emperor was at an increased risk for stroke, which might have contributed to his death. The finding aligns with historical records that described the emperor as having aphasia, drooping eyelids, and an abnormal gait—potential symptoms of a stroke.

The genetic analysis shows the Xianbei people intermarried with ethnically Han Chinese when they migrated southward into northern China. “This is an important piece of information for understanding how ancient people spread in Eurasia and how they integrated with local people,” Wen says.

Next, the team plans to study the people who lived in ancient Chang’an city in northwestern China by studying their ancient DNA. Chang’an was the capital city of many Chinese empires over thousands of years and the eastern terminus of the Silk Road, an important Eurasian trade network from the second century BC until the 15th century. The researchers hope that the DNA analysis can reveal more information about how people migrated and exchanged cultures in ancient China.

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Funding information for this paper can be found in the paper text. The authors declare no competing interests.

Current Biology, Du et al. “Ancient genome of the Chinese emperor Wu of Northern Zhou” https://cell.com/current-biology/fulltext/S0960-9822(24)00240-9

4,000-year-old teeth illuminate the impact of changing human diets over the centurie

 


Researchers at Trinity College Dublin have recovered remarkably preserved microbiomes from two teeth dating back 4,000 years, found in an Irish limestone cave. Genetic analyses of these microbiomes reveal major changes in the oral microenvironment from the Bronze Age to today. The teeth both belonged to the same male individual and also provided a snapshot of his oral health.

The study, carried out in collaboration with archaeologists from the Atlantic Technological University and University of Edinburgh, was published today in leading journal Molecular Biology and Evolution. The authors identified several bacteria linked to gum disease and provided the first high-quality ancient genome of Streptococcus mutans, the major culprit behind tooth decay. 

While S. mutans is very common in modern mouths, it is exceptionally rare in the ancient genomic record. One reason for this may be the acid-producing nature of the species. This acid decays the tooth, but also destroys DNA and stops plaque from fossilising. While most ancient oral microbiomes are retrieved from fossilised plaque, this study targeted the tooth directly. 

Another reason for the scarcity of S. mutans in ancient mouths may be the lack of favorable habitats for this sugar-loving species. An uptick of dental cavities is seen in the archaeological record after the adoption of cereal agriculture thousands of years ago, but a far more dramatic increase has occurred only in the past few hundred years when sugary foods were introduced to the masses. 

The sampled teeth were part of a larger skeletal assemblage excavated from Killuragh Cave, County Limerick, by the late Peter Woodman of University College Cork. While other teeth in the cave showed advanced dental decay, no cavities were visible on the sampled teeth. However, one tooth produced an unprecedented amount of S. mutans DNA, a sign of an extreme imbalance in the oral microbial community.

“We were very surprised to see such a large abundance of S. mutans in this 4,000-year-old tooth,” said Dr Lara Cassidy, an assistant professor in Trinity’s School of Genetics and Microbiology, and senior author of the study. “It is a remarkably rare find and suggests this man was at a high risk of developing cavities right before his death.”

The researchers also found that other streptococcal species were virtually absent from the tooth. This indicates the natural balance of the oral biofilm had been upset – mutans had outcompeted the other streptococci leading to the pre-disease state.

The team also found evidence to support the "disappearing microbiome" hypothesis, which proposes modern microbiomes are less diverse than those of our ancestors. This is cause for concern, as biodiversity loss can impact human health. The two Bronze Age teeth produced highly divergent strains of Tannerella forsythia, a bacteria implicated in gum disease.

“These strains from a single ancient mouth were more genetically different from one another than any pair of modern strains in our dataset, despite the modern samples deriving from Europe, Japan and the USA,” explained Iseult Jackson, a PhD candidate at Trinity, and first author of the study. “This represents a major loss in diversity and one that we need to understand better.” 

Very few full genomes from oral bacteria have been recovered prior to the Medieval era. By characterising prehistoric diversity, the authors were able to reveal dramatic changes in the oral microenvironment that have happened since. 

Dr Cassidy added: “Over the last 750 years, a single lineage of T. forsythia has become dominant worldwide. This is the tell-tale sign of natural selection, where one strain rises rapidly in frequency due to some genetic advantage it holds over the others. T. forsythia strains from the industrial era onwards contain many new genes that help the bacteria colonise the mouth and cause disease.

“S. mutans has also undergone recent lineage expansions and changes in gene content related to pathogenicity. These coincide with humanity’s mass consumption of sugar, although we did find that modern S. mutans populations have remained more diverse, with deep splits in the S. mutans evolutionary tree pre-dating the Killuragh genome.” 

The scientists believe this is driven by differences in the evolutionary mechanisms that shape genome diversity in these species.

“S. mutans is very adept at swapping genetic material between strains,” said Dr Cassidy. “This means an advantageous innovation can be spread across S. mutans lineages like a new piece of tech. This ability to easily share innovations may explain why this species retains many diverse lineages without one becoming dominant and replacing all the others.”

In effect, both these disease-causing bacteria have changed dramatically from the Bronze Age to today, but it appears that very recent cultural transitions in the industrial era have had an inordinate impact.