Friday, October 6, 2023

Ancient DNA


Reports and Proceedings

AMERICAN ASSOCIATION FOR THE ADVANCEMENT OF SCIENCE (AAAS)

In this Special Issue of Science, three Reviews highlight how recent advances in the field of ancient DNA have greatly advanced our understanding of the evolutionary history of many plants and animals, including our own species. “This special issue examines the changing landscape of how ancient DNA (aDNA) is studied today, including previously untapped sources, improvements in technology, and ethical challenges, and what we’ve learned about ourselves though ancient DNA,” write Corinne Simonti and Madeleine Seale, associate editors at Science.

In one Review, María Ávila-Arcos and colleagues discuss the significance of aDNA in addressing non-European regional questions. According to the authors, much of the early human aDNA research was focused on large-scale events, such as continental-scale population migrations or genetic admixture events, with an overrepresentation of European-focused studies. However, many regional questions, particularly those relevant to the Global South, remain underexplored. By reviewing several recent paleogenomics studies that have been successful in highlighting local histories and health in the Americas, Africa, Asia, and Oceana, particularly that of the Indigenous and Descendant communities that live there, Ávila-Arcos et al. underscore the importance of bringing a regional perspective to aDNA research. They further explore the ethical considerations as the field shifts towards answering finer-scale questions. When done correctly, finer-scale aDNA investigations can be a powerful tool with the potential to integrate neglected or oppressed communities and to uncover past histories that have been lost or erased from history.

Another Review, by Hernán Burbano and Rafal Gutaker, discusses the use of aDNA from herbarium specimens – historically collected and preserved plant samples – to provide glimpses into past plant communities. Such insight can provide a better understanding of the evolutionary and ecological processes that shape plants over time and could help inform new conservation efforts. In a third Review, Beth Shapiro and colleagues explore the state-of-the-art in paleogenomics techniques and discuss the key challenges that remain, including technical limitations that impede the ability to evaluate “deep-time” ancient DNA.

Thursday, October 5, 2023

Analysis of grinding tools reveals plant, pigment and bone processing in Neolithic Northern Saudi Arabia


Peer-Reviewed Publication

MAX PLANCK INSTITUTE OF GEOANTHROPOLOGY

Grindstone 

IMAGE: 

RE-FIT OF A GRINDING STONE FROM JEBEL ORAF

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CREDIT: CERI SHIPTON

In recent years, studies have revealed that the now-arid region of northern Arabia was once much wetter and greener, providing Neolithic human populations with access to both water and game. The present aridity of the region, however, preserves little organic matter, making a reconstruction of the Neolithic lifestyle difficult.

Now, in a new study published in the journal PLOS ONE, researchers from the Max Planck Institute of Geoanthropology, the National Research Council of Italy, Institute of Heritage Science (CNR ISPC), and University College London present use-wear analysis of grinding tools recovered from Jebel Oraf in the Nefud desert of Saudi Arabia, revealing new insights into this little-understood chapter of the human story. Use-wear analysis shows that grinding tools were used for the processing of bone, pigment and plants, and were sometimes re-used for different purposes during their life span, before finally being broken up and placed on hearths.

In the new study, researchers use high-powered microscopes to compare use-wear patterns on the archaeological tools with those on experimental tools. In experiments, the grinding of grains, other plants, bone or pigment produces distinctive macro- and micro-traces on the tools’ used surface, including fractures, edge rounding of individual grains, levelled areas, striations, and different types of polish. These distinctive traces were also identified on the Neolithic grinding tools, allowing the scientists to determine which materials were being processed. 

Although faunal remains have previously revealed that meat was cooked and consumed at Jebel Oraf, wear patterns indicate that meat and bones were first processed on grindstones, revealing the possibility that bones were broken to access bone marrow.

Grinding tools were also used to process plants. While there is no evidence for domesticated grains in northern Arabia in this period, the authors argue that wild plants were ground and perhaps baked into simple breads.

“The hearths where we found the grinding tools were extremely short-lived, and people may have been very mobile – breads would have made a good and easily transportable food for them,” says Maria Guagnin, researcher at the Max Planck Institute of Geoanthropology and one of the study’s lead authors.

The researchers also found evidence of pigment processing, which they argue may be linked to Neolithic paintings. Their findings reveal that pigment was ground and processed on a much larger scale than previously assumed, suggesting there may have been more painted Neolithic rock art than the few surviving panels suggest.

“It is clear grinding tools were important for the Neolithic occupants of Jebel Oraf. Many were heavily used, and some even had holes in them that suggest they were transported. That means people carried heavy grinding tools with them and their functionality must have been an important element in daily life,” says Giulio Lucarini of the National Research Council of Italy, the study’s other lead author.

This type of analysis has only rarely been applied to archaeological materials from the Arabian peninsula, but can provide important information on the manufacture, use, and re-use of grinding tools, which in turn provides insight into the subsistence, economy, and art of the people who produced them.

Researchers involved in this study work in close partnership with the Saudi Ministry of Culture. Additional partners include King Saud University and key institutions in the United Kingdom, Ireland and Australia.

Early human migrants followed lush corridor-route out of Africa

 


Peer-Reviewed Publication

UNIVERSITY OF SOUTHAMPTON

One of two flakes, or hand tools, seen from three different angles. 

IMAGE: 

ONE OF TWO FLAKES, OR HAND TOOLS, SEEN FROM THREE DIFFERENT ANGLES, DISCOVERED IN THE JORDAN RIFT VALLEY. THE FLAKES HELPED SCIENTISTS DATE HUMAN MIGRATION.

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CREDIT: UNIVERSITY OF SOUTHAMPTON

An international team of scientists has found early human migrants left Africa for Eurasia, across the Sinai peninsula and on through Jordan, over 80-thousand years ago.

Researchers from the University of Southampton (UK) and Shantou University (China), together with colleagues in Jordan, Australia and the Czech Republic(1), have proved there was a “well-watered corridor” which funnelled hunter-gatherers through The Levant towards western Asia and northern Arabia via Jordan.

Their findings, published in the journal Science Advances, support previous research conducted in Arabia suggesting this green, overland route, which is now desert, was favoured by travelling Homo sapiens heading north.

‘Modern’ humans evolved in Africa between 300 and 200 thousand years ago and dispersed out of the continent in several stages. It’s thought that over tens of thousands of years they went on to populate Asia and then Europe.

For this latest research, the team conducted fieldwork in the Jordan Rift Valley where they uncovered hand tools, known as ‘flakes’, on the edge of wadis – now dry river channels which, tens of thousands of years ago, were full of water. The scientists used luminescence dating techniques to help establish the age of the sediment the tools were buried in. This method estimates how long it has been since sediment was last exposed to light.

The results showed the tools were likely to have been used approximately 84 thousand years ago and then abandoned on the banks of the wadis and subsequently buried over time.

Paul Carling, Professor of Geomorphology at the University of Southampton, comments: “It’s long been thought that when the sea level was low, humans used a southern crossing, via the Red Sea from the horn of Africa, to get to southwestern Arabia. However, our study confirms there was a well-trodden passage to the north, across the only land-route from Africa to Eurasia.

“Our newly published evidence is a key piece of the puzzle that shows humans migrated using a northern route – using small wetland areas as bases whilst hunting abundant wildlife in the drier grasslands.   Although previous studies have looked for large lakes as potential watering holes, in fact small wetlands were very important as staging posts during the migration.”

Dr Mahmoud Abbas, the study’s lead author from Shantou University, China, said: “The Levant acted as a well-watered corridor for modern humans to disperse out of Africa during the last interglacial, and we have now demonstrated this is the case in the Jordan Rift Valley zone.

“The paleohydrological evidence from the Jordan desert enhances our understanding of the environmental setting at that time. Rather than dry desert, savannah grasslands would have provided the much-needed resources for humans to survive during their journey out of Africa and into southwest Asia and beyond.”

The researchers say their study demonstrates the intimate relationship between climate change, human survival and migrations.

Prehistoric people occupied upland regions of inland Spain in even the coldest periods of the last Ice Age

 

15,000-21,000 years ago, inland Iberia may have been more populated than traditionally thought

Peer-Reviewed Publication

PLOS

Human occupations of upland and cold environments in inland Spain during the Last Glacial Maximum and Heinrich Stadial 1: The new Magdalenian sequence of Charco Verde II 

IMAGE: VIEW FROM THE TOP OF THE CHARCO VERDE II ARCHEOLOGICAL DEPOSIT DURING THE 2021 EXCAVATION SEASON. view more 

CREDIT: ARAGONCILLO-DEL RÍO ET AL., 2023, PLOS ONE, CC-BY 4.0 (HTTPS://CREATIVECOMMONS.ORG/LICENSES/BY/4.0/)

Paleolithic human populations survived even in the coldest and driest upland parts of Spain, according to a study published October 4, 2023 in the open-access journal PLOS ONE by Manuel Alcaraz-Castaño of the University of Alcalá, Spain, Javier Aragoncillo-del Rió of the Molina-Alto Tajo UNESCO Global Geopark, Spain and colleagues.

Research into ancient hunter-gatherer populations of the Iberian Peninsula has mainly focused on coastal regions, with relatively little investigation into the inland. A classic hypothesis has been that the cold and dry conditions of inland Iberia would have been too harsh for such populations to inhabit during the coldest periods of the Last Glacial, but recent findings have begun to challenge this view. In this study, researchers report new evidence for high-altitude human occupation from the Upper Paleolithic of Spain.

This evidence comes from a site called Charco Verde II, located in the Guadalajara province. This site is situated over 1,000 meters above sea level, in one of the coldest regions of Spain. Despite this, the abundance of tools and ornaments at the site reveals a recurring sequence of human occupation between around 21,000 and 15,000 years ago. This time span is especially notable since it includes two of the coldest periods of the Last Glacial.

This discovery further challenges the idea that Upper Palaeolithic humans avoided inland Iberia due to its harsh climate, and instead shows that the inland hosted complex and relatively dense settlements even during very cold and arid periods. These findings add to the growing evidence for Middle and Upper Paleolithic occupations throughout this region, altogether indicating that the historic lack of evidence for hunter-gatherer sites in inland Iberia is not an accurate reflection of prehistoric human distributions, but instead a result of modern research hitherto prioritizing study of coastal regions and neglecting the inland.

 The freely available article in PLOS ONE: https://journals.plos.org/plosone/article?id=10.1371/journal.pone.0291516

Wednesday, October 4, 2023

A prehistoric cosmic airburst preceded the advent of agriculture in the Levant

 

Agriculture in Syria started with a bang 12,800 years ago as a fragmented comet slammed into the Earth’s atmosphere. The explosion and subsequent environmental changes forced hunter-gatherers in the prehistoric settlement of Abu Hureyra to adopt agricultural practices to boost their chances for survival.

That’s the assertion made by an international group of scientists in one of four related research papers, all appearing in the journal Science Open: Airbursts and Cratering Impacts. The papers are the latest results in the investigation of the Younger Dryas Impact Hypothesis, the idea that an anomalous cooling of the Earth almost 13 millennia ago was the result of a cosmic impact.

“In this general region, there was a change from more humid conditions that were forested and with diverse sources of food for hunter-gatherers, to drier, cooler conditions when they could no longer subsist only as hunter-gatherers,” said Earth scientist James Kennett, a professor emeritus of UC Santa Barbara . The settlement at Abu Hureyra is famous among archaeologists for its evidence of the earliest known transition from foraging to farming. “The villagers started to cultivate barley, wheat and legumes,” he noted. “This is what the evidence clearly shows.”

These days, Abu Hureyra and its rich archaeological record lie under Lake Assad, a reservoir created by construction of the Taqba Dam on the Euphrates River in the 1970s. But before this flood, archaeologists managed to extract loads of material to study. “The village occupants,” the researchers state in the paper, “left an abundant and continuous record of seeds, legumes and other foods.” By studying these layers of remains, the scientists were able to discern the types of plants that were being collected in the warmer, humid days before the climate changed and in the cooler, drier days after the onset of what we know now as the Younger Dryas cool period.

Before the impact, the researchers found, the inhabitants’ prehistoric diet involved wild legumes and wild-type grains, and “small but significant amounts of wild fruits and berries.” In the layers corresponding to the time after cooling, fruits and berries disappeared and their diet shifted toward more domestic-type grains and lentils, as the people experimented with early cultivation methods. By about 1,000 years later, all of the Neolithic “founder crops” — emmer wheat, einkorn wheat, hulled barley, rye, peas, lentils, bitter vetch, chickpeas and flax — were being cultivated in what is now called the Fertile Crescent. Drought-resistant plants, both edible and inedible, become more prominent in the record as well, reflecting a drier climate that followed the sudden impact winter at the onset of the Younger Dryas.

The evidence also indicates a significant drop in the area’s population, and changes in the settlement’s architecture to reflect a more agrarian lifestyle, including the initial penning of livestock and other markers of animal domestication.

To be clear, Kennett said, agriculture eventually arose in several places on Earth in the Neolithic Era, but it arose first in the Levant (present-day Syria, Jordan, Lebanon, Palestine, Israel and parts of Turkey) initiated by the severe climate conditions that followed the impact.

And what an impact it must have been. 

In the 12,800-year-old layers corresponding to the shift between hunting and gathering and agriculture, the record at Abu Hureyra shows evidence of massive burning. The evidence includes a carbon-rich “black mat” layer with high concentrations of platinum, nanodiamonds and tiny metallic spherules that could only have been formed under extremely high temperatures — higher than any that could have been produced by man’s technology at the time. The airburst flattened trees and straw huts, splashing meltglass onto cereals and grains, as well as on the early buildings, tools and animal bones found in the mound — and most likely on people, too. 

This event is not the only such evidence of a cosmic airburst on a human settlement. The authors previously reported a smaller but similar event which destroyed the biblical city at Tall el-Hammam in the Jordan Valley about 1600 BCE.

The black mat layer, nanodiamonds and melted minerals have also been found at about 50 other sites across North and South America and Europe, the collection of which has been called the Younger Dryas strewnfield. According to the researchers, it’s evidence of a widespread simultaneous destructive event, consistent with a fragmented comet that slammed into the Earth’s atmosphere. The explosions, fires and subsequent impact winter,  they say, caused the extinction of most large animals, including the mammoths, saber-toothed cats, American horses, and American camels, as well as the collapse of the North American Clovis culture.

Because the impact appears to have produced an aerial explosion there is no evidence of craters in the ground. “But a crater is not required,” Kennett said. “Many accepted impacts have no visible crater.” The scientists continue to compile evidence of relatively lower-pressure cosmic explosions — the kind that occur when the shockwave originates in the air and travels downward to the Earth’s surface. 

“Shocked quartz is well known and is probably the most robust proxy for a cosmic impact,” he continued. Only forces on par with cosmic-level explosions could have produced the microscopic deformations within quartz sand grains at the time of the impacts, and these deformations have been found in abundance in the minerals gathered from impact craters.

This “crème de la crème” of cosmic impact evidence has also been identified at Abu Hureyra and at other Younger Dryas Boundary (YDB) sites, despite an absence of craters. However, it has been argued that the kind of shock-fractured quartz found in the YDB sites is not equivalent to that found in the large crater-forming sites, so the researchers worked to link these deformations to lower-pressure cosmic events.

To do so, they turned to manmade explosions of the magnitude of cosmic airbursts: nuclear tests conducted at the Alamogordo Bombing Range in New Mexico in 1945 and in Kazakhstan, in 1949 and 1953. Similar to cosmic airbursts, the nuclear explosions occurred above ground, sending shockwaves toward Earth.

“In the papers, we characterize what the morphologies are of these shock fractures in these lower-pressure events,” Kennett said. “And we did this because we wanted to compare it with what we have in the shock-fractured quartz in the Younger Dryas Boundary, to see if there was any comparison or similarities between what we see at the Trinity atomic test site and other atomic bomb explosions.” Between the shocked quartz at the nuclear test sites and the quartz found at Abu Hureyra, the scientists found close associations in their characteristics, namely glass-filled shock fractures, indicative of temperatures greater than 2,000 degrees Celsius, above the melting point of quartz.

“For the first time, we propose that shock metamorphism in quartz grains exposed to an atomic detonation is essentially the same as during a low-altitude, lower-pressure cosmic airburst,” Kennett said. However, the so-called “lower pressure” is still very high — probably greater than 3 GPa or about 400,000 pounds per square inch, equivalent to about five 737 airplanes stacked on a small coin. The novel protocol the researchers developed for identifying shock fractures in quartz grains will be useful in identifying previously unknown airbursts that are estimated to recur every few centuries to millennia.

Taken together, the evidence presented by these papers, according to the scientists, “implies a novel causative link among extraterrestrial impacts, hemispheric environmental and climatic change, and transformative shifts in human societies and culture, including agricultural development.”

Saturday, September 30, 2023

Oldest hunter-gatherer basketry in southern Europe, 9,500 years old, discovered


Oldest hunter-gatherer basketry in southern Europe, 9,500 years old, discovered in Cueva de los Murciélagos, Albuñol (Granada, Spain) 

IMAGE: OLDEST MESOLITHIC BASKETS IN SOUTHERN EUROPE, 9,500 YEARS OLD. view more 

CREDIT: MUTERMUR PROJECT

A team of scientists, led by researchers from the Universidad de Alcalá (UAH) and the Universitat Autònoma de Barcelona (UAB), has discovered and analyzed the first direct evidence of basketry among hunter-gatherer societies and early farmers in southern Europe in the Cueva de los Murciélagos of Albuñol (Granada, Spain).

Their work, published in the prestigious journal Science Advances, analyzes 76 objects made of organic materials (wood, reed and esparto) discovered during 19th century mining activities in the Granada cave. The researchers studied the raw materials and technology and carried out carbon-14 dating, which revealed that the set dates to the early and middle Holocene period, between 9,500 and 6,200 years ago. This is the first direct evidence of basketry made by Mesolithic hunter-gatherer societies in southern Europe and a unique set of other organic tools associated with early Neolithic farming communities, such as sandals and a wooden mace.

As researcher of the Prehistory Department of the University of Alcalá Francisco Martínez Sevilla explains, ”the new dating of the esparto baskets from the Cueva de los Murciélagos of Albuñol opens a window of opportunity to understanding the last hunter-gatherer societies of the early Holocene. The quality and technological complexity of the basketry makes us question the simplistic assumptions we have about human communities prior to the arrival of agriculture in southern Europe. This work and the project that is being developed places the Cueva de los Murciélagos as a unique site in Europe to study the organic materials of prehistoric populations”.

Cueva de los Murciélagos is located on the coast of Granada, to the south of the Sierra Nevada and 2 kilometers from the town of Albuñol. The cave opens on the right side of the Barranco de las Angosturas, at an altitude of 450 meters above sea level and about 7 kilometers from the current coastline. It is one of the most emblematic prehistoric archaeological sites of the Iberian Peninsula due to the rare preservation of organic materials, which until this study had only been attributed to the Neolithic. The objects made of perishable materials were discovered by the mining activities of the 19th century and were documented and recovered by Manuel de Góngora y Martínez, later becoming part of the first collections of the National Archaeological Museum of Madrid.

As detailed by María Herrero Otal, co-author of the work and researcher at the Universitat Autònoma de Barcelona, “the esparto grass objects from Cueva de los Murciélagos are the oldest and best-preserved set of plant fiber materials in southern Europe so far known. The technological diversity and the treatment of the raw material documented demonstrates the ability of prehistoric communities to master this type of craftsmanship, at least since 9,500 years ago, in the Mesolithic period. Only one type of technique related to hunter-gatherers has been identified, while the typological, technological and treatment range of esparto grass was extended during the Neolithic from 7,200 to 6,200 years before the present”.

The work is part of the project “De los museos al territorio: actualizando el estudio de la Cueva de los Murciélagos de Albuñol (Granada)” (MUTERMUR), which has been funded by the Community of Madrid and the Universidad de Alcalá. The objective of this project is the holistic study of the site and its material record, applying the latest archaeometric techniques and generating quality scientific data. The project also included the collaboration of the National Archaeological Museum, the Archaeological and Ethnological Museum of Granada, the City Council of Albuñol and the owners of the cave.

“The results of this work and the finding of the oldest basketry in southern Europe give more meaning, if possible, to the phrase written by Manuel de Góngora in his work Prehistoric Antiquities of Andalusia (1868): ‘the now forever famous Cueva de los Murciélagos’”, the authors highlight.

Human evolution: Hominins challenge giant hyenas for carcasses in Prehistoric simulations


Peer-Reviewed Publication

SCIENTIFIC REPORTS

Hominins — the group that includes humans and our extinct relatives — may have been capable of competing with giant hyenas for carcasses abandoned by sabre-toothed cats and jaguars during the late-early Pleistocene era (approximately 1.2 to 0.8 million years ago) in southern Europe. The findings of this modelling study are published in Scientific Reports and suggest that moderately sized groups of hominins may have been the most successful at scavenging.

Previous research has theorised that the number of carcasses abandoned by sabre-toothed cats may have been able to sustain early hominin populations in southern Europe. However, it has been unclear whether other large scavengers such as giant hyenas may have limited hominin access to this food resource. 

Ana Mateos, Jesús Rodríguez, and colleagues ran simulations to model competition for carrion (the flesh of dead animals) between hominins and giant hyenas (Pachycrocuta brevirostris) in the Iberian Peninsula in the late-early Pleistocene era. The authors simulated whether the sabre-toothed cats Homotherium latidens and Megantereon whitei and the European jaguar (Panthera gombaszoegensis) could have left enough carrion to support hyena and hominin populations, and how this may have been affected by the size of scavenging groups of hominins. 

The authors found that when hominins scavenged in groups that were large enough to chase away giant hyenas (five or more individuals), hominin populations exceeded giant hyena populations by the end of simulations. However, when hominins scavenged in very small groups, they were only able to survive to the end of a simulation when predator density — and therefore carcass availability — was high. The simulations also suggested a potential optimum group size for scavenging hominins, as groups of over 10 individuals were able to chase away sabre-toothed cats or jaguars but groups of over 13 individuals required more carcasses to sustain their energy expenditure. However, the authors note that their simulations could not specify what the optimum group size was as the numbers of hominins needed to chase away hyenas, sabre-toothed cats, and jaguars were pre-determined and arbitrarily assigned.

Together, the findings suggest that moderately-sized groups of late-early Pleistocene hominins in southern Europe may have been able to regularly obtain food by scavenging for carcasses, even in competition with giant hyenas. The authors speculate that scavenged remains may have been an important source of meat and fat for hominins, especially in winter when plant resources were scarce.